Installing with conda

SImMER is distributed through conda-forge, and can be installed via conda. This is the recommended installation method. To do so, run

conda config --add channels conda-forge
conda install simmer

Installing with pip

SImMER is also distributed on PyPI. It can be installed with

pip install simmer

Installing from source

SImMER is developed on GitHub. If you received the code as a tarball or zip, skip to below the git clone line. It is recommended to run the below lines in a fresh conda environment.

python3 -m pip install -U pip
python3 -m pip install -U setuptools setuptools_scm pep517
git clone
cd simmer
python3 -m pip install -e .

Test the installation

To ensure that the installation has been performed smoothly, feel free to run the unit and integration tests included with the package. The entire test suite should take on the order of 10 minutes to run. In the process, a few (~2) gigabytes of data will be downloaded from this project’s associated Dropbox files; they’ll be automatically deleted once the test suite is finished.

From the simmer directory, then run

python3 -m unittest discover src